🕸️ Systems Biology - Ryougishiki · Scour

An extension of Modular Response Analysis for global perturbations and robust connectivity inference of gene regulatory networks.

⚗️Metabolic Modeling Academic

Hyperpathway: visualizing organization of pathway-molecule enriched interactions in omics studies via hyperbolic bipartite network embedding

🧬Computational Biology Academic

Biological aging clocks offer insights, not diagnostics

📈AI Progress

medicalxpress.com·

Multiscale learning of gene network-driven phenotypic dynamics of single cells

🧬bioinformatics Academic

link.springer.com·

NANOG assembles into self-limiting aging micelles that drive a sol-gel transition and modulate DNA dynamics

🧬Computational Biology Academic

A multiscale, Bayesian inference approach to augment mechanistic models of cell signaling with machine-learning predictions of binding affinity

🧬Computational Biology

journals.plos.org·

Less-relevant results

Suzanne Simard sealed paper birch and Douglas fir seedlings inside plastic bags, fed them carbon-14 and carbon-13 dioxide, and nine days later found carbon had crossed between species through fungal threads in the British Columbia soil beneath her boots

📢Science Communication

maketecheasier.com·

Coffee hides caffeine’s bitterness in a surprising way

📢Science Communication

Why Does Coffee Taste Good? Scientists Solve 200-Year Caffeine Mystery

📢Science Communication

studyfinds.com·

Evolution of phenocopying in a dynamical model of developmental trajectories

⚗️Metabolic Modeling

journals.plos.org·

Integrative single-cell and spatial transcriptomics with machine learning identify a Luminal-inflam malignant program and reveal an RPN1–PERK UPR vulnerability in triple-negative breast cancer

🧬Computational Biology Academic

Single-cell gene regulatory network reconstruction and key regulator identification using a dual-channel fusion graph convolutional network

🧬Computational Biology Academic

Uniform sampling of canalizing Boolean functions reveals hidden biases in Boolean network analysis

🔬AI Research Academic

Multimodal physical evidence uncovers interpretable gene regulatory networks for perturbation prediction

🧬Computational Biology Academic

Intrinsic neuronal diversity as a substrate for cortical area specialization in primate vision

🧠Neuroscience Academic

A Dataset of Benchmark Boolean Models for Gene Regulatory Networks

⚗️Metabolic Modeling Academic

CytoGem-XAI:A Hypergraph Neural Network Framework for Genome-Scale Metabolic Modeling and Interpretable Analysis

⚗️Metabolic Modeling Academic

KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible Genome Analysis

🧬bioinformatics Academic

Cell differentiation can underpin the reproducibility of morphogenesis

🔬Synthetic Biology

journals.plos.org·

DataXflowGen for GenAI-driven model generation

⚗️Metabolic Modeling Academic

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