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k-mer Analysis
🧬 k-mer Analysis
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k-mer, kmer counting, minimizers, genome assembly, jellyfish
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26
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KDM: embedding DNA/RNA motifs and sequences in a shared
k-mer
space for unified discovery,
analysis
and binding prediction
🌸
Bloom Filters
Content type:
Academic
biorxiv.org
·
3d
3 days ago
Actions for KDM: embedding DNA/RNA motifs and sequences in a shared k-mer space for unified discovery, analysis and binding prediction
The first chromosome-scale
genome
assembly
for Dermacentor reticulatus: a key vector of tick-borne pathogens of public and veterinary health importance in Europ...
🌸
Bloom Filters
Content type:
Academic
link.springer.com
·
8h
8 hours ago
Actions for The first chromosome-scale genome assembly for Dermacentor reticulatus: a key vector of tick-borne pathogens of public and veterinary health importance in Europ...
A New Level Set Formulation for Improved Dirichlet Eigenvalue
Minimizers
🎨
Generative Art
Content type:
Academic
arxiv.org
·
2d
2 days ago
Actions for A New Level Set Formulation for Improved Dirichlet Eigenvalue Minimizers
Less-relevant results
Distinct
genomic
architectures but the same gene underlie the convergent evolution of a plant supergene
🌳
B-Trees
science.org
·
19h
19 hours ago
Actions for Distinct genomic architectures but the same gene underlie the convergent evolution of a plant supergene
A highly contiguous chromosome-level
genome
assembly
of the Chilean jack mackerel Trachurus murphyi
🌳
B-Trees
Content type:
Academic
nature.com
·
1d
1 day ago
Actions for A highly contiguous chromosome-level genome assembly of the Chilean jack mackerel Trachurus murphyi
Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens
🌸
Bloom Filters
journals.plos.org
·
6d
6 days ago
Actions for Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens
Deep-sea megafauna
co-opts
microbial energy metabolism genes to withstand ultra-long starvation
🖥️
HPC
Content type:
Academic
sciencedirect.com
·
4d
4 days ago
Actions for Deep-sea megafauna co-opts microbial energy metabolism genes to withstand ultra-long starvation
A chromosome-level
genome
assembly
of the chemosymbiotic species Rugalucina vietnamica (Lucinida: Lucinidae)
🖥️
HPC
Content type:
Academic
nature.com
·
1d
1 day ago
Actions for A chromosome-level genome assembly of the chemosymbiotic species Rugalucina vietnamica (Lucinida: Lucinidae)
TDKC (Target Distilled
K-mer
Classifier): Ultrafast and Memory-Efficient Sequence Classification for Target Pathogen Diagnostics
🌸
Bloom Filters
Content type:
Academic
biorxiv.org
·
4d
4 days ago
Actions for TDKC (Target Distilled K-mer Classifier): Ultrafast and Memory-Efficient Sequence Classification for Target Pathogen Diagnostics
Towards the implementation of a quantum classifier
🌸
Bloom Filters
Content type:
Academic
arxiv.org
·
1d
1 day ago
Actions for Towards the implementation of a quantum classifier
Correction: A High-quality chromosome-level
genome
assembly
of Swertia przewalskii Pissjauk
🌳
B-Trees
Content type:
Academic
nature.com
·
3d
3 days ago
Actions for Correction: A High-quality chromosome-level genome assembly of Swertia przewalskii Pissjauk
On the
Minimum
Attainable Risk in Permutation Invariant Problems
⏭️
Skip Lists
Content type:
Academic
arxiv.org
·
2d
2 days ago
Actions for On the Minimum Attainable Risk in Permutation Invariant Problems
KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible
Genome
Analysis
🌸
Bloom Filters
Content type:
Academic
biorxiv.org
·
6d
6 days ago
Actions for KBase Research Agent: Automated Multi-Agent Workflow Construction for Reproducible Genome Analysis
Generalization in Nonlinear Least Squares via Learned Feature Geometry
🌸
Bloom Filters
Content type:
Academic
arxiv.org
·
2d
2 days ago
Actions for Generalization in Nonlinear Least Squares via Learned Feature Geometry
High quality
genome
assemblies
of African cattle breeds using PacBio HiFi sequencing
🖥️
HPC
Content type:
Academic
nature.com
·
5d
5 days ago
Actions for High quality genome assemblies of African cattle breeds using PacBio HiFi sequencing
DipSkmer: Reference-free population
genomics
with diploid genome skims
🌸
Bloom Filters
Content type:
Academic
biorxiv.org
·
2d
2 days ago
Actions for DipSkmer: Reference-free population genomics with diploid genome skims
$p$-adic
Bi-Filtrations
for Topological Machine Learning on
Genomic
Sequences
🌸
Bloom Filters
Content type:
Academic
arxiv.org
·
6d
6 days ago
Actions for $p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences
Optimal Post-Training Quantization Scales and Where to Find Them
💾
Cache Optimization
Content type:
Academic
arxiv.org
·
1d
1 day ago
Actions for Optimal Post-Training Quantization Scales and Where to Find Them
R-loop Prediction Reveals Generalization Limits of DNA Foundation Models Beyond Regulatory
Genomics
🌸
Bloom Filters
Content type:
Academic
biorxiv.org
·
6d
6 days ago
Actions for R-loop Prediction Reveals Generalization Limits of DNA Foundation Models Beyond Regulatory Genomics
Variance Inequalities for Transformed Fr\'echet Means in Hadamard Spaces
🌸
Bloom Filters
Content type:
Academic
arxiv.org
·
1d
1 day ago
Actions for Variance Inequalities for Transformed Fr\'echet Means in Hadamard Spaces
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