💻 Bioinformatics - nmarshall · Scour

scFAIR Consortium: a decentralized hub for single-cell RNA-Seq data standardization and unification

🧬Computational Biology Academic

samsampleX: Distribution-aware downsampling for benchmarking next-generation sequencing data

⏱️Time-series Optimization Academic

Animal acoustic communication has a conserved optimal rhythm within the neural delta range

🧬Computational Biology

journals.plos.org·

Integrative proteomics and lipidomics reveals dual roles for lipid droplets in the host cell antiviral response

🧬biology Academic

Structure-guided taxonomic placement of divergent RNA viruses with ViraClass

🧬Computational Biology Academic

A hidden switch fine-tunes the heart’s elasticity

🧬Computational Biology Blog

rna-seqblog.com·

UnBlender: validating individual analyses in respiratory bulk RNA-seq cell type deconvolution

🧬Computational Biology Academic

Molecular glue degraders of HuR suppress BRAF-mutant colorectal cancer

🧬Biomedicine Academic

Quasi-birth-and-death processes evolving within trees: Applications to comparative phylogenetics

🧬Computational Biology Academic

Enformer-Based Phylogenetic Tree Reconstruction

🧬Computational Biology Academic

Study is first demonstration of gene transcription measurement in the living brain

🎙️Whisper Blog

rna-seqblog.com·

TaxoFormer: Hierarchical Transformer for Predicting the Full Taxonomic Lineage of Protein Sequences

🧬Computational Biology Academic

Comparing RNA velocity methods for tracking cell development

🧬Computational Biology Blog

rna-seqblog.com·

Auditable recovery of single-cell RNA-seq zeros with SPARE

🧬Computational Biology Academic

AF_Cache: Efficient Pipeline for Running AlphaFold for High-Throughput Protein-Protein Interaction Prediction

🧬Computational Biology Academic

Structural motif search across the protein universe with Folddisco

📂open source Academic

·

Proteomics-constrained deconvolution reveals spatial cell-type programs in tumours

🔬Tumor Microenvironment Academic

SpecPCM: A Low-power PCM-based In-Memory Computing Accelerator for Full-stack Mass Spectrometry Analysis

⚙Risc-v Academic

Expert-Guided Supervised Annotation of Erythroid Differentiation in Single-Cell RNA-seq

🧬Computational Biology Academic

Metadata Collector: An Open-Source Platform for Standardized Metadata Management in Multi Centre Sequencing Projects

🧬Computational Biology Academic

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