Living in an Ivory Basement · Scour

A bioinformatics training career panel in the DIB Lab

ivory.idyll.org·236w

Using snakemake to do simple wildcard operations on many, many, many files

ivory.idyll.org·246w

A biotech career panel in the DIB Lab

ivory.idyll.org·252w

Scaling sourmash to millions of samples

ivory.idyll.org·253w

New sourmash databases are available!

ivory.idyll.org·255w

Moving sourmash towards more community engagement - a funding application

ivory.idyll.org·258w

Searching all public metagenomes with sourmash

ivory.idyll.org·258w

sourmash 4.1.0 released!!

ivory.idyll.org·261w

sourmash 4.0 is now available! Low low cost if you buy now!

ivory.idyll.org·271w

sourmash v4.0.0 release candidate 1 is now available for comment!

ivory.idyll.org·273w

Transition your Python project to use pyproject.toml and setup.cfg! (An example.)

ivory.idyll.org·276w

A snakemake hack for checkpoints

ivory.idyll.org·277w

Improved workflows-as-applications: tips and tricks for building applications on top of snakemake

ivory.idyll.org·301w

sourmash databases as zip files, in sourmash v3.3.0

ivory.idyll.org·314w

Software and workflow development practices (April 2020 update)

ivory.idyll.org·317w

How to give a bad online talk

ivory.idyll.org·318w

Some snakemake hacks for dealing with large collections of files

ivory.idyll.org·323w

Two talks at JGI in May: sourmash, spacegraphcats, and disease associations in the human microbiome.

ivory.idyll.org·326w

sourmash-oddify: a workflow for exploring contamination in metagenome-assembled genomes

ivory.idyll.org·332w

Finding problematic bacterial/archaeal genomes using k-mers and taxonomy

ivory.idyll.org·333w

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