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bioRxiv: Bioinformatics Preprints
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2w
2 weeks ago
pLM-Guided Inverse Folding for Antibody Sequence Design
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Actions for pLM-Guided Inverse Folding for Antibody Sequence Design
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2w
2 weeks ago
Automated Retinal Dysplasia Segmentation in Mouse Optical Coherence Tomography Scans Using a UNet-Based model
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Actions for Automated Retinal Dysplasia Segmentation in Mouse Optical Coherence Tomography Scans Using a UNet-Based model
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2w
2 weeks ago
VelOT: kinetic-free RNA velocity inference via optimal transport, flow-field smoothing, and VAMP coarse-graining of cellular dynamics
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Actions for VelOT: kinetic-free RNA velocity inference via optimal transport, flow-field smoothing, and VAMP coarse-graining of cellular dynamics
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2w
2 weeks ago
Handshake: Partner-Specific Protein-Protein Binding Site Prediction at Scale Using ProstT5 and Cross-Chain Attention
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Actions for Handshake: Partner-Specific Protein-Protein Binding Site Prediction at Scale Using ProstT5 and Cross-Chain Attention
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2w
2 weeks ago
samsampleX: Distribution-aware downsampling for benchmarking next-generation sequencing data
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2w
2 weeks ago
An inflammatory gene set driven epigenetic clock tracks down disease progression and rejuvenation
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Actions for An inflammatory gene set driven epigenetic clock tracks down disease progression and rejuvenation
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2w
2 weeks ago
Comparative Proteomics Across Tissues and Crop Agroecosystems Reveals Agricultural Stressor Responses in the Western Honey Bee
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Actions for Comparative Proteomics Across Tissues and Crop Agroecosystems Reveals Agricultural Stressor Responses in the Western Honey Bee
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2w
2 weeks ago
Mapping Chemical Diversity: Descriptor-Guided Clustering of Natural Products in the COCONUT Database
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Actions for Mapping Chemical Diversity: Descriptor-Guided Clustering of Natural Products in the COCONUT Database
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2w
2 weeks ago
Multivariate integration of histological images and gene expression data: a comparative review
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Actions for Multivariate integration of histological images and gene expression data: a comparative review
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2w
2 weeks ago
Revised Adaptive Immune Receptor Data in the Immune Epitope Database
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2w
2 weeks ago
TetraFuse: A Synergistic Four-Dimensional Dynamic Fusion Framework for Efficient and Robust Medical Image Classification
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Actions for TetraFuse: A Synergistic Four-Dimensional Dynamic Fusion Framework for Efficient and Robust Medical Image Classification
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2w
2 weeks ago
Chromap Suite: an open-source single-binary platform for agentic multiomic RNA + ATAC profiling
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Actions for Chromap Suite: an open-source single-binary platform for agentic multiomic RNA + ATAC profiling
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2w
2 weeks ago
Compositional and interpretable representation of histology using AI foundation models and sparse autoencoders
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Actions for Compositional and interpretable representation of histology using AI foundation models and sparse autoencoders
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2w
2 weeks ago
Temporal Biodynamics: An AI Platform for Identification of Stage-Relevant Targets and Biomarkers
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Actions for Temporal Biodynamics: An AI Platform for Identification of Stage-Relevant Targets and Biomarkers
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2w
2 weeks ago
HOPE: Interpretable Histology Analysis with Spatial Omics-Derived Signatures for Precision Oncology
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Actions for HOPE: Interpretable Histology Analysis with Spatial Omics-Derived Signatures for Precision Oncology
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2w
2 weeks ago
EnzOracle: Mechanism-aware prediction of enzyme environmental adaptation via a classification-guided mixture-of-experts framework
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Actions for EnzOracle: Mechanism-aware prediction of enzyme environmental adaptation via a classification-guided mixture-of-experts framework
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2w
2 weeks ago
Correcting for Global Synonymous Selection Improves the Accuracy of Episodic Positive Selection Inference
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Actions for Correcting for Global Synonymous Selection Improves the Accuracy of Episodic Positive Selection Inference
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2w
2 weeks ago
STITCH: Spatial Transcriptomics Imputation via Flow Matching with Internal Learning
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2w
2 weeks ago
Ignet 2.0 and Vignet: An Ontology-Driven Web Platform for Biomedical Gene Interaction Discovery and Visualization
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Actions for Ignet 2.0 and Vignet: An Ontology-Driven Web Platform for Biomedical Gene Interaction Discovery and Visualization
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2w
2 weeks ago
PAG-Agent: a biologist-oriented research assistant for context-aware pathway-level analysis and interpretation
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Actions for PAG-Agent: a biologist-oriented research assistant for context-aware pathway-level analysis and interpretation
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