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bioRxiv: Bioinformatics Preprints
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2d
2 days ago
FeatureMSEA: Metabolic Feature-based Metabolite Set Enrichment Analysis
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Actions for FeatureMSEA: Metabolic Feature-based Metabolite Set Enrichment Analysis
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Nickel-Driven Dynamics of Urease in Sporosarcina pasteurii: Integrated Computational and Experimental Insights
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Actions for Nickel-Driven Dynamics of Urease in Sporosarcina pasteurii: Integrated Computational and Experimental Insights
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2d
2 days ago
Perturbation Curve models continuous transcriptional response trajectories and improves prediction of genetic modulations
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Actions for Perturbation Curve models continuous transcriptional response trajectories and improves prediction of genetic modulations
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2 days ago
StickForStats: automated statistical assumption validation for reproducible computational biology
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Actions for StickForStats: automated statistical assumption validation for reproducible computational biology
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SteerAF: Distogram-based Steering of AlphaFold2 toward Alternative Conformations
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Actions for SteerAF: Distogram-based Steering of AlphaFold2 toward Alternative Conformations
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2 days ago
OmniPath Metabo: chemical structures, interactions and mechanisms to study the metabolome
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Actions for OmniPath Metabo: chemical structures, interactions and mechanisms to study the metabolome
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2 days ago
Simulation-based Bayesian deep learning enables uncertainty-aware tumor fraction estimation in cell-free DNA
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Actions for Simulation-based Bayesian deep learning enables uncertainty-aware tumor fraction estimation in cell-free DNA
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2 days ago
Population-associated molecular variation in histologically normal breast tissue is context-dependent and associated with distinct transcriptional states
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Actions for Population-associated molecular variation in histologically normal breast tissue is context-dependent and associated with distinct transcriptional states
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2d
2 days ago
Structure Bioinformatics of Eight Human ATP Synthase Fo Subunits and Their AlphaFold3-Predicted Water-Soluble QTY Analogs
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Actions for Structure Bioinformatics of Eight Human ATP Synthase Fo Subunits and Their AlphaFold3-Predicted Water-Soluble QTY Analogs
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2 days ago
Structure-Based Immunoinformatics Design of a CTB-Adjuvanted Multi-Epitope Mucosal Vaccine Against Helicobacter pylori
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Actions for Structure-Based Immunoinformatics Design of a CTB-Adjuvanted Multi-Epitope Mucosal Vaccine Against Helicobacter pylori
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A Two-Stage Interpretable Framework for Predicting Plant-Derived Small RNA Targets on Human 3'UTRs
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Actions for A Two-Stage Interpretable Framework for Predicting Plant-Derived Small RNA Targets on Human 3'UTRs
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Robust Conditional Diffusion with Noisy Templates for Antibody Sequence-Structure Design
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Actions for Robust Conditional Diffusion with Noisy Templates for Antibody Sequence-Structure Design
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2 days ago
fuzzyfold: a high-performance framework for stochastic RNA folding kinetics
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Actions for fuzzyfold: a high-performance framework for stochastic RNA folding kinetics
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2 days ago
pykarambola: Minkowski tensor morphometry of 3D structures
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Actions for pykarambola: Minkowski tensor morphometry of 3D structures
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segSHAPE: RNA secondary structure prediction from nanopore direct RNA sequencing
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Actions for segSHAPE: RNA secondary structure prediction from nanopore direct RNA sequencing
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Bayesian modeling of longitudinal metatranscriptomes of broiler meat spoilage microbiomes shows shared predictive signature associated with spoilage at refriger...
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Actions for Bayesian modeling of longitudinal metatranscriptomes of broiler meat spoilage microbiomes shows shared predictive signature associated with spoilage at refriger...
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3d
3 days ago
MorphoStat: A Statistics-Aware Pipeline for Morphological Profiling Analysis
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Actions for MorphoStat: A Statistics-Aware Pipeline for Morphological Profiling Analysis
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3d
3 days ago
Predicting optimal growth temperatures of bacteria using learned structural information from a single protein
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Actions for Predicting optimal growth temperatures of bacteria using learned structural information from a single protein
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3 days ago
Trajectory inference of epithelial-centered neighborhood profiles reconstructs a pseudo-temporal continuum in idiopathic pulmonary fibrosis
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Actions for Trajectory inference of epithelial-centered neighborhood profiles reconstructs a pseudo-temporal continuum in idiopathic pulmonary fibrosis
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3d
3 days ago
novelBGC: An interactive dual-score framework for biosynthetic gene cluster novelty assessment and candidate prioritisation
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Actions for novelBGC: An interactive dual-score framework for biosynthetic gene cluster novelty assessment and candidate prioritisation
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