bioRxiv: Bioinformatics Preprints · Scour

Discriminative learning of substitution matrices and gap penalties for pairwise alignment of biological sequences

A Multimodal Neural Network Model for Early Recurrence Prediction in Lung Adenocarcinoma

HiCPEP: Efficient estimation of chromatin compartment PC1 from Hi-C covariance structure

The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlas

Metabarcode and transcriptome datasets of Pinus sylvestris to assess fungal phyllosphere and disease dynamics.

Genome-wide computational prediction of miRNAs encoded by influenza A virus (H3N2) predicts target genes involved in pulmonary and antiviral innate immunity

Automated assembly of protein complexes from cryo-EM maps with structure-informed Monte Carlo Tree Search

Deep Learning Structural Ensembles as Proxies for Protein Flexibility

SpatialArtifacts: a computational framework for tissue artifact detection in spatial transcriptomics data

GeneFior: A back to basics and transparent multi-tool approach tosequence detection

Mantis-Delta: Mass-Action Network Theory and Steady-State Characterization for Chemical Reaction Networks

IntegrateRigor: annotation-free integration optimization for cell identity recovery reveals cancer-immune interface niches

Evaluating open LLMs for agentic analysis orchestration in a typical biomedical lab

TreeGazer: Prospecting Protein Sequence-Function Landscapes via Phylogenetic Structure

Rescuing true protein binders from AI hallucinations via zero-shot, ensemble-driven statistical physics scoring

Manchester Proteome Profiler: A User-Friendly Platform for Quantitative Proteomic Analysis

MIMOSA: A model-independent framework for transcription factor binding site motif similarity assessment

Identifying Treatment Related Signatures In Glioblastoma Using KaleidoCell

TorchRef: An open-source PyTorch Framework for Crystallographic Refinement

OpenBase: a universal framework for high-accuracy single-molecule detection of diverse non-canonical DNA bases using nanopore sequencing

Log in to enable infinite scrolling