bioRxiv: Bioinformatics Preprints · Scour

Clustering Strategies Improve Structure-Preserving Visualization of Single-Cell RNA-seq Data with CBMAP

ANYI: The ANnotated Yeast Interactome

Massively parallel reporter assay-informed modeling improves prediction of context-specific enhancer-gene regulatory interactions

Network-based analysis of glioblastoma identifies patient communities and cluster-specific biomarkers

Clonal embeddings allow exploratory analysis of lineage-resolved single-cell data

Automatic Bevacizumab Response Prediction in Ovarian Cancer from Digital Pathology Images via Novel AI-based Computational Pipeline

Joint Variable Selection for Omic Biomarkers in Time-to-Event Data

Machine learning approaches for the identification and analysis of enterotoxin genes in Staphylococcus aureus genomes

Transfer Learning Enables Drug-Target Interaction Prediction in Data-Scarce One-Carbon Metabolism

Revealing the Hidden Landscape of Public Metabolomics Data Reuse in MetaboLights

Structure-derived synthetic sequences guide a protein language model toward metalloproteins

A universal taxonomic and functional human gut microbiome model for disease classification and phenotype discovery

MeiCOfi: Meiotic CrossOver Finder in haploid, diploid, polyploid and hyper-recombinant genomes

Robust identification of cell-cell communication heterogeneity in single cells

MOSAIC: Model-based, Subgroup-Aware Identification of Driver Mutations in Cancer

MetaUmbra: Statistically Controlled Genome-Level Presence Inference from Metaproteomic Peptides

Radiant DIA: A Fast, Sensitive, and Accurate Search Engine for Quantitative Proteomics

AnnotateMissense: a genome-wide annotation and benchmarking framework for missense pathogenicity prediction

FastDedup - A fast and memory-efficient tool for read deduplication

AI-guided discovery of atypical protein assemblies

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