bioRxiv: Bioinformatics Preprints · Scour

Small Area Estimation of Forest Volume Using Mixed Effects Random Forests and Multi-Source Remote Sensing Data

MSAgent: An Evidence Grounded Agentic Framework for LLM-driven Scientific Exploration in Mass Spectrometry-based Metabolomics

Hierarchical Breakdown of RNA Structure Prediction in CASP16: From Reliable Local Features to Speculative Multimer Assembly

Quantifying data reuse in proteomics using PRIDE downloads statistics and a semi-supervised LLM-based framework

Verticall: A fast and robust tool for recombination detection in large-scale bacterial genomic datasets

CellPulse: A Foundation Model of Coordinated Gene Dynamics Simulating Viral Infectious Diseases

Genomic dialects: How amino acid properties and the second codon base shape the informational accents of life

SpatialQuery: scalable discovery and molecular characterization of multicellular motifs from spatial omics data

Aiki-XP: leakage-controlled multimodal prediction of within-species relative protein expression at pan-bacterial scale

A Systematic Evaluation of Single-Cell Batch Integration Metrics and sBEE: A Robust New Metric

H2O: A Foundation Model Bridging Histopathology to Spatial Multi-Omics Profiling

Systematic Evaluation of AlphaFold2 and OpenFold3 on Protein-Peptide Complexes

Metaxa: A Transformer-Based Deep Learning Model for Taxonomic Classification of Long Nanopore Reads

EpiRanha: Hunting for Epitope Similarity with a Structure- and Residue-Aware Graph Neural Network

Tensor-Derived Similarity Networks for Characterising Spatial Patterns in Colorectal Cancer

GenNA: Conditional generation of nucleotide sequences guided by natural-language annotations

Efficient and scalable modelling of cotranscriptional RNA folding with deterministic and iterative RNA structure sampling

Turep: Detecting cross-cancer tumor-reactive T cells in single-cell and spatial transcriptomics data

Back to BERT in 2026: ModernGENA as a Strong, Efficient Baseline for DNA Foundation Models

An autonomous LLM agent platform for computational binder design and conjugation-aware prioritization of antibody drug conjugates

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