bioRxiv: Bioinformatics Preprints · Scour

Reinforcement learning-driven unified generative framework for multi-objective RNA codon design

Virus-human protein-protein interactions predict viral phenotypes

Testing the reliability of AI-generated protein structures

MoE-Bind: Guiding De Novo Protein Binder Generation with Sparse Experts

ADMETron: An AI-driven SaaS platform for comprehensive ADMET prediction and compound prioritisation

Computational Design of Optimal Sequences for Targeted Hypermutagenesis Using Recombination-Coupled Diversity-Generating Retroelements

ProMiSE: Protein Multi-State Evaluation Benchmark in Biological Contexts

A Graph-based QSAR Modeling Pipeline for Predicting In vitro PubChem Assays and In vivo Human Hepatotoxicity: Mechanistic Analysis of Caspase-3/7 Activation

CAREPath: Semantic Context-Aware Reasoning Paths with Mechanism-Augmented Embeddings for Drug Repurposing

Evaluating cell type annotations in single-cell omics in the absence of ground truth

PeptiDIA: A Machine Learning Framework for Enhanced Peptide Identification in Fast-Gradient Data-Independent Acquisition Proteomics

PHI-Reason: evidence-grounded species-level phage-host prediction from structured biological text profiles

Generalisable tissue-wide molecular reconstruction from histology

Deciphering cross-omics complexity of tissues via diagonal integration of unpaired spatial multi-omics data

The Geometry of Allostery: A Laplacian Minor Hierarchy for Many-Body Protein Communication

DNA Compression with Genomic Language Models: Tokenization, Benchmarking, and an Information-Content Map

From Proteome Mining to Structural Validation: Phosphopyruvate Hydratase as a Structurally Tractable Drug Target in Kinetoplastid Parasites

Systematic functional annotation of thousands of BAHD acyltransferases in plant genomes using Protein Language Model and phylogenomic tools

HalluDesign-NA: Extending HalluDesign for De Novo Nucleic Acid Design

Viability of engineered AAVs via protein language models

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