AutoRNAseq: Automated Bulk RNA-seq Analysis Pipeline (opens in new tab)

Summary Improved accessibility of high-throughput RNA sequencing has increased the amount of data generated each year. This increase in data creates a need for reproducible pipelines that can process RNA-seq data consistently across experiments. AutoRNAseq addresses this need by providing a Snakemake-based workflow for bulk RNA-seq analysis by automating data retrieval, quality control, and gene quantification. Unlike existing RNA-seq workflows that require users to coordinate multiple pipeli...