biorxiv.org

Aiki-GeNano: Multi-Stage Preference Optimization for Generative Design of Developable Nanobodies (opens in new tab)

Therapeutic nanobodies must combine target binding with biophysical and chemical properties that determine manufacturability, stability, and clinical viability, collectively termed developability, yet most computational design pipelines still treat developability as a post-hoc filter rather than an integrated training objective. We present Aiki-GeNano, a three-stage language-model alignment pipeline for epitope-conditioned nanobody generation that integrates multiple developability signals di...

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