Viral non-coding RNA structure annotation and API-based data retrieval with Rfam and R2DT (opens in new tab)

Rfam is a comprehensive database of non-coding RNA (ncRNA) families providing curated sequence alignments, consensus secondary structures, and covariance models for thousands of RNA families. The database is essential for identifying structured non-coding RNAs in newly sequenced genomes and understanding RNA structure-function relationships. Here we present computational protocols for automated ncRNA annotation of viral genomes, and for programmatic interaction with Rfam through its RESTful A...