CARIBOU: Computational AI Research Interface for Bioinformatics, Omics, and Unifying Agents (opens in new tab)

Single-cell and spatial omics technologies are generating biological datasets at a scale that increasingly exceeds the capacity of expert manual analysis. Although large language models (LLMs) can generate bioinformatics code, most existing systems remain limited by stateless execution, poor reproducibility, restricted deployment environments, and an inability to adapt analyses in response to intermediate results. Here, we present CARIBOU (Computational AI Research Interface for Bioinformatic...