CellExLink: End-to-end cell-type recognition and normalization in biomedical text (opens in new tab)

Cell-type extraction is an important task in biomedical text mining because biomedical literature contains evidence about cell types and cell-type-related biological interactions that supports studies of disease mechanisms, therapeutic response, and translational biomedical modeling. However, current biomedical text-mining systems either do not explicitly support cell-type extraction, provide limited support for Cell Ontology normalization, or achieve limited accuracy for end-to-end cell-type...