biorxiv.org

pLM-Guided Inverse Folding for Antibody Sequence Design (opens in new tab)

Inverse folding, predicting amino acid sequences from three-dimensional structures, is a foundational task in computational protein design, yet it is hindered by the scarcity of structural data, which limits model training and risks overfitting. The standard approach fine-tunes general inverse folding models on domain-specific structural datasets like antibodies, but such data remain expensive. To enable inverse folders to benefit more from abundant sequence data, we propose combining Protein...

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