Hyperpathway: visualizing organization of pathway-molecule enriched interactions in omics studies via hyperbolic bipartite network embedding (opens in new tab)

Pathway enrichment analysis (PEA) of omics data identifies significant pathway–molecule associations, yet delivers results as tabular lists in which complex systems-biology insights remain inaccessible. Hyperpathway is an open-access network-based webtool that addresses this limitation through three original innovations: (1) conversion of a PEA results table into a pathway–molecule bipartite network; (2) a minimal artificial linking strategy to resolve structural disconnections; (3) a leaf re...