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Bioinformatics (OUP) Open Access
academic.oup.com
academic.oup.com
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2d
2 days ago
ChromBERT-tools: A versatile toolkit for context-specific regulatory representations of transcription regulators across different cell types
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Actions for ChromBERT-tools: A versatile toolkit for context-specific regulatory representations of transcription regulators across different cell types
academic.oup.com
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3d
3 days ago
Membrane Kymograph Generator: A cross-platform GUI software for automated generation and analysis of kymographs along dynamic cell boundaries
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Actions for Membrane Kymograph Generator: A cross-platform GUI software for automated generation and analysis of kymographs along dynamic cell boundaries
academic.oup.com
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3d
3 days ago
GMHAN: A Heterogeneous Graph Attention Framework for Prioritizing Coding and Non-coding Driver Genes
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Actions for GMHAN: A Heterogeneous Graph Attention Framework for Prioritizing Coding and Non-coding Driver Genes
academic.oup.com
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4d
4 days ago
Praxis-BGM: Clustering of Omics Data Using Semi-Supervised Transfer Learning for Gaussian Mixture Models via Natural-Gradient Variational Inference
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Actions for Praxis-BGM: Clustering of Omics Data Using Semi-Supervised Transfer Learning for Gaussian Mixture Models via Natural-Gradient Variational Inference
academic.oup.com
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4d
4 days ago
needLR: Long-read structural variant annotation with population-scale frequency estimation
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Actions for needLR: Long-read structural variant annotation with population-scale frequency estimation
academic.oup.com
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4d
4 days ago
Robust prioritization of genomic features with stability selection
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Actions for Robust prioritization of genomic features with stability selection
academic.oup.com
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4d
4 days ago
DyMamba: Dynamic Mamba for Microscopy Image Semantic Segmentation
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Actions for DyMamba: Dynamic Mamba for Microscopy Image Semantic Segmentation
academic.oup.com
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5d
5 days ago
barbieQ: an R software package for analysing barcode count data from clonal tracking experiments
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Actions for barbieQ: an R software package for analysing barcode count data from clonal tracking experiments
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5d
5 days ago
GT-Mamba: A Topology-Aware Graph-State Space Model for Robust and Interpretable Epigenetic Age Prediction
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Actions for GT-Mamba: A Topology-Aware Graph-State Space Model for Robust and Interpretable Epigenetic Age Prediction
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5d
5 days ago
PhyloNaP: a user-friendly database of Phylogeny for Natural Product–producing enzymes
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Actions for PhyloNaP: a user-friendly database of Phylogeny for Natural Product–producing enzymes
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5d
5 days ago
NanoSimFormer: an end-to-end Transformer-based nanopore signal simulator with basecaller guidance
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Actions for NanoSimFormer: an end-to-end Transformer-based nanopore signal simulator with basecaller guidance
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5d
5 days ago
VIJB: a companion of the JBROWSE genome browser for the visually impaired people
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Actions for VIJB: a companion of the JBROWSE genome browser for the visually impaired people
academic.oup.com
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6d
6 days ago
LinearCapR: Linear-time computation of per-nucleotide structural-context probabilities of RNA without base-pair span limits
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Actions for LinearCapR: Linear-time computation of per-nucleotide structural-context probabilities of RNA without base-pair span limits
academic.oup.com
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1w
1 week ago
CistromeMeta: A Large Language Model Powered Tool for Automated ChIP-seq Metadata Extraction
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Actions for CistromeMeta: A Large Language Model Powered Tool for Automated ChIP-seq Metadata Extraction
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1w
1 week ago
Harmonization and Integration of Pharmacogenomics Screens
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Actions for Harmonization and Integration of Pharmacogenomics Screens
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1w
1 week ago
SEMPLR: an R package for transcription factor binding prediction
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Actions for SEMPLR: an R package for transcription factor binding prediction
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2w
2 weeks ago
BioMedGraphica: An All-in-One Platform for Joint Textual Biomedical Prior Knowledge and Numeric Graph Generation
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Actions for BioMedGraphica: An All-in-One Platform for Joint Textual Biomedical Prior Knowledge and Numeric Graph Generation
academic.oup.com
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3w
3 weeks ago
HisCMCL: Cross-Modal Contrastive Learning with Hierarchical Multi-Scale Fusion for Spatial Expression Prediction
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Actions for HisCMCL: Cross-Modal Contrastive Learning with Hierarchical Multi-Scale Fusion for Spatial Expression Prediction
academic.oup.com
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3w
3 weeks ago
Genomics-Informed Approach Identifies Which Cell Types Regulate the Metabolome
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Actions for Genomics-Informed Approach Identifies Which Cell Types Regulate the Metabolome
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3w
3 weeks ago
VisPan: Real-time visualisation of multiplex amplicon-based sequencing panels for rapid syndromic surveillance and pathogen detection
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Actions for VisPan: Real-time visualisation of multiplex amplicon-based sequencing panels for rapid syndromic surveillance and pathogen detection
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