Blue Collar Bioinformatics bcbio.wordpress.com

Note: new posts have moved to http://bcb.io/ Please look there for the latest updates and comments

Validating multiple cancer variant callers and prioritization in tumor-only samples
bcbio.wordpress.com·584w
Benchmarking variation and RNA-seq analyses on Amazon Web Services with Docker
bcbio.wordpress.com·595w
Validating generalized incremental joint variant calling with GATK HaplotypeCaller, FreeBayes, Platypus and samtools
bcbio.wordpress.com·606w
Validated whole genome structural variation detection using multiple callers
bcbio.wordpress.com·614w
Whole genome trio variant calling evaluation: low complexity regions, GATK VQSR and high depth filters
bcbio.wordpress.com·627w
Improving reproducibility and installation of genomic analysis pipelines with Docker
bcbio.wordpress.com·636w
Updated comparison of variant detection methods: Ensemble, FreeBayes and minimal BAM preparation pipelines
bcbio.wordpress.com·656w
Summary from Bioinformatics Open Science Codefest 2013: Tools, infrastructure, standards and visualization
bcbio.wordpress.com·669w
Scaling variant detection pipelines for whole genome sequencing analysis
bcbio.wordpress.com·677w
Framework for evaluating variant detection methods: comparison of aligners and callers
bcbio.wordpress.com·680w

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