Phylogenetic Tools for Comparative Biology blog.phytools.org

Estimation of shape parameter α in our Γ distributed rate varying discrete character evolution model

blog.phytools.org·1w·blog.phytools.org

Simple new S3 <code>plot</code> method for the <code>"fastAnc"</code> object class

blog.phytools.org·15w·blog.phytools.org

Uncertain input data for hidden-rates model in fitHRM

blog.phytools.org·24w·blog.phytools.org

New version of phytools on CRAN

blog.phytools.org·33w·blog.phytools.org

Ancestral states for a discrete trait when some nodes are known

blog.phytools.org·36w·blog.phytools.org

A Pagel '94 type correlation model with one binary trait and one continuous character for phytools

blog.phytools.org·43w·blog.phytools.org

How to create a traitgram with the horizontal axis reversed.... (It's pretty easy.)

blog.phytools.org·44w·blog.phytools.org

A Pagel '94 type correlation test with one binary trait and a second continuous character via the discretized diffusion approximation

blog.phytools.org·44w·blog.phytools.org

A discrete character dependent mult-trended Brownian motion with a trend model using the discretized diffusion approximation

blog.phytools.org·45w·blog.phytools.org

More about a discrete trait dependent multi-trend trended Brownian motion model in phytools

blog.phytools.org·45w·blog.phytools.org

A multi-&sigma;2, multi-&mu;, discrete-state-dependent trended Brownian model using the discretized diffusion approximation

blog.phytools.org·46w·blog.phytools.org

Why parameter estimates in fitPagel can hit upper bounds, even if they don't in fitMk for each trait modeled separately....

blog.phytools.org·49w·blog.phytools.org

A semi-threshold trait evolution model in phytools

blog.phytools.org·51w·blog.phytools.org

Parameter estimation under the bounded Brownian model with absorbing bounds

blog.phytools.org·52w·blog.phytools.org

A bounded continuous character evolution model with absorbing boundaries for phytools

blog.phytools.org·53w·blog.phytools.org

A new semi-threshold trait evolution model for phytools

blog.phytools.org·55w·blog.phytools.org

Projecting a continuous character onto the branches of multiple trees using a consistent color gradient with contMap

blog.phytools.org·57w·blog.phytools.org

A minimum sample size for multirateBM in phytools

blog.phytools.org·57w·blog.phytools.org

A "polymorphic" trait evolution model with a null or absent condition

blog.phytools.org·59w·blog.phytools.org

A simple custom R contour plotter

blog.phytools.org·65w·blog.phytools.org

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