Phylogenetic Tools for Comparative Biology blog.phytools.org

A simple custom R contour plotter

blog.phytools.org·65w

Minor improvements to fitPagel for fitting a correlated binary trait evolution model in phytools

blog.phytools.org·68w·blog.phytools.org

Minor improvements to fitPagel for fitting a correlated binary trait evolution model in phytools

blog.phytools.org·68w

A general clade box function for phytools

blog.phytools.org·68w·blog.phytools.org

A general clade box function for phytools

blog.phytools.org·68w

Drawing boxes around clades graphed in a circular (fan or arc) style

blog.phytools.org·69w·blog.phytools.org

Drawing boxes around clades graphed in a circular (fan or arc) style

blog.phytools.org·69w

A hack to show clades in an arc or fan-style tree using polygons

blog.phytools.org·69w·blog.phytools.org

A hack to show clades in an arc or fan-style tree using polygons

blog.phytools.org·69w

Learning about the structure of the "phylo" object class through a phylogenetic Hanukkah menorah

blog.phytools.org·72w·blog.phytools.org

Learning about the structure of the "phylo" object class through a phylogenetic Hanukkah menorah

blog.phytools.org·72w

Local marginal ancestral state reconstruction of discrete phenotypic traits now in phytools

blog.phytools.org·72w·blog.phytools.org

Local marginal ancestral state reconstruction of discrete phenotypic traits now in phytools

blog.phytools.org·72w

"Global" vs. "local" marginal ancestral state reconstruction of discrete phenotypic traits

blog.phytools.org·72w·blog.phytools.org

"Global" vs. "local" marginal ancestral state reconstruction of discrete phenotypic traits

blog.phytools.org·72w

Some updates to fitfnMk for fitting an ordered Mk model in which the rates of change between adjacent character levels vary according to an n-degree polynomial ...

blog.phytools.org·73w·blog.phytools.org

Some updates to fitfnMk for fitting an ordered Mk model in which the rates of change between adjacent character levels vary according to an n-degree polynomial ...

blog.phytools.org·73w

Simulating & plotting trait evolution on a phylogeny under a 'semi-threshold' model

blog.phytools.org·75w·blog.phytools.org

Simulating & plotting trait evolution on a phylogeny under a 'semi-threshold' model

blog.phytools.org·75w

Fitting a discrete or hidden character multi-rate continuous trait evolution model using the discrete approximation in phytools

blog.phytools.org·80w·blog.phytools.org

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