bioRxiv: Bioinformatics Preprints

TRACEY: an updated resource for SNARE protein domain annotation with improved HMMs and expanded sequence coverage

biorxiv.org·

DDI_single: Single-Sequence-Based Protein Domain Assembly

biorxiv.org·

HydraMPP: A lightweight library for distributed massive parallel processing in Python - threading at scale.

biorxiv.org·

DipSkmer: Reference-free population genomics with diploid genome skims

biorxiv.org·

scFAIR Consortium: a decentralized hub for single-cell RNA-Seq data standardization and unification

biorxiv.org·

From topography to connectome: Towards an integrated understanding of the resting brain

biorxiv.org·

HNSW-MS: Hierarchical Graph Indexing Enables Accurate Real-Time Mass Spectral Similarity Search at Repository Scale

biorxiv.org·

Multi-feature Classification to Improve Colorimetric Loop-Mediated Isothermal Amplification Fidelity

biorxiv.org·

Intra-slide calibration technology improves immunohistochemical harmonization within and between anatomic pathology laboratories

biorxiv.org·

CiliAI: Automated segmentation and compartment specific fluorescence quantification of primary cilia in confocal microscopy images

biorxiv.org·

CytoGem-XAI:A Hypergraph Neural Network Framework for Genome-Scale Metabolic Modeling and Interpretable Analysis

biorxiv.org·

Single-cell gene regulatory network reconstruction and key regulator identification using a dual-channel fusion graph convolutional network

biorxiv.org·

VelocityFM: Short-Horizon Protein Trajectory Prediction via Flow Matching in Velocity Space

biorxiv.org·

Multimodal physical evidence uncovers interpretable gene regulatory networks for perturbation prediction

biorxiv.org·

Polynomial Trajectory Compression for Protein Language Model Embeddings

biorxiv.org·

Germline regulation of tumor evolutionary dynamics shapes multiple myeloma progression

biorxiv.org·

A Web-based software toolkit for accessible and best-practice machine learning analyses in biomedical research

biorxiv.org·

Bias-mitigated microbiome inference refines coronary artery disease signature

SPARQ-MI leverages end-to-end spatial single-cell analysis of the tumor microenvironment

TRACEY: an updated resource for SNARE protein domain annotation with improved HMMs and expanded sequence coverage

DDI_single: Single-Sequence-Based Protein Domain Assembly

HydraMPP: A lightweight library for distributed massive parallel processing in Python - threading at scale.

DipSkmer: Reference-free population genomics with diploid genome skims

scFAIR Consortium: a decentralized hub for single-cell RNA-Seq data standardization and unification

From topography to connectome: Towards an integrated understanding of the resting brain

HNSW-MS: Hierarchical Graph Indexing Enables Accurate Real-Time Mass Spectral Similarity Search at Repository Scale

Multi-feature Classification to Improve Colorimetric Loop-Mediated Isothermal Amplification Fidelity

Intra-slide calibration technology improves immunohistochemical harmonization within and between anatomic pathology laboratories

CiliAI: Automated segmentation and compartment specific fluorescence quantification of primary cilia in confocal microscopy images

CytoGem-XAI:A Hypergraph Neural Network Framework for Genome-Scale Metabolic Modeling and Interpretable Analysis

Single-cell gene regulatory network reconstruction and key regulator identification using a dual-channel fusion graph convolutional network

VelocityFM: Short-Horizon Protein Trajectory Prediction via Flow Matching in Velocity Space

Multimodal physical evidence uncovers interpretable gene regulatory networks for perturbation prediction

Polynomial Trajectory Compression for Protein Language Model Embeddings

Germline regulation of tumor evolutionary dynamics shapes multiple myeloma progression

A Web-based software toolkit for accessible and best-practice machine learning analyses in biomedical research

Metadata Collector: An Open-Source Platform for Standardized Metadata Management in Multi Centre Sequencing Projects