bioRxiv: Bioinformatics Preprints · Scour

Revealing trajectories of multi-modal voxel-level changes in neurodegenerative diseases using latent event mapping

TMO: ASYMMETRIC CROSS-MODAL ATTENTION FOR LEARNINGCELL-STATE-DEPENDENT REGULATORY LAGS FROM SINGLE-CELL MULTIOMIC DATA

ANCHOR: haplotype-aware allelic and isoform inference from single-cell long-read RNA sequencing with de novo variant calling

VFUSE: Virulent Feature Understanding with Sparse autoEncoders

TifBERT: a self-supervised foundation model for normalization-robust bulk RNA-seq representation learning

A high-quality chromosome-scale reference genome assembly for Asparagus racemosus var. CIM-Shakti (Shatavari), a medicinal plant of Ayurvedic importance

Combinatorial docking and molecular generation to navigate over 100-billion molecules for prospective ligand discovery

HoloCell: A Generative Foundation Model for Holistic Cellular Modeling

Robust semi-supervised scRNA-seq integration from virtual adversarial learning

Sequence-Based Therapeutic Peptide Classification with Augmented Negative Sampling

HOMED enables hierarchical and multimodal optimization of DNA methylation deconvolution across tissues

Folding the unfoldable 2: using AlphaFold and ESMFold to explore spurious proteins

Pseudoperplexity Probes Memorization in Protein Language Models

When batch correction corrupts gene expression: uncovering distortions in correlation structures

GEOAgent: An AI-driven Autonomous Framework for Intelligent GEO Data Retrieval and Standardized Preprocessing

Promera: a unified model for biomolecular structure prediction, filtering, and design

A Unified Spatial AI Framework for Cross-Domain Tissue-State Analysis in Trauma, Oral, and Cardiovascular Pathology

APOSM: Pairwise preference learning improves generative small-molecule design

Is level-1 blob reconstruction under the network multispecies coalescent easy?

ECMME: an atlas of selection pressures on the mammalian extracellular matrix reveals contrasting evolutionary dynamics

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