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bioRxiv: Bioinformatics Preprints
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2w
2 weeks ago
Learning residue-level context for modeling protein-protein interactions
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Actions for Learning residue-level context for modeling protein-protein interactions
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2w
2 weeks ago
A comparative analysis of promoter-proximal pausing reveals kinetic and distributional dimensions of variation
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Actions for A comparative analysis of promoter-proximal pausing reveals kinetic and distributional dimensions of variation
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2w
2 weeks ago
Language Modeling Materializes a World Model of Protein Biology
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Actions for Language Modeling Materializes a World Model of Protein Biology
biorxiv.org
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2w
2 weeks ago
Hierarchical classification of immune cell transcriptomes at population-scale
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Actions for Hierarchical classification of immune cell transcriptomes at population-scale
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2w
2 weeks ago
UnBlender: validating individual analyses in respiratory bulk RNA-seq cell type deconvolution
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Actions for UnBlender: validating individual analyses in respiratory bulk RNA-seq cell type deconvolution
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2w
2 weeks ago
De Novo Design and Computational Validation of a High-Affinity Peptide Inhibitor Targeting the HPV E1-E2 Interface
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Actions for De Novo Design and Computational Validation of a High-Affinity Peptide Inhibitor Targeting the HPV E1-E2 Interface
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2w
2 weeks ago
Proteomics-constrained deconvolution reveals spatial cell-type programs in tumours
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Actions for Proteomics-constrained deconvolution reveals spatial cell-type programs in tumours
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2w
2 weeks ago
Integrating Histology with Spatial Molecular Programs Using a Multimodal Foundation Model
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Actions for Integrating Histology with Spatial Molecular Programs Using a Multimodal Foundation Model
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2w
2 weeks ago
Predicting P-glycoprotein Substrate Status Using a Pretrained Graph Neural Network: A TDC Benchmark Study
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Actions for Predicting P-glycoprotein Substrate Status Using a Pretrained Graph Neural Network: A TDC Benchmark Study
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2w
2 weeks ago
Genomic, Transcriptomic, and Regulomic Analyses Do Not Support Profound Autism as a Distinct Biological Category
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Actions for Genomic, Transcriptomic, and Regulomic Analyses Do Not Support Profound Autism as a Distinct Biological Category
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2w
2 weeks ago
Mapping the structural coverage of Arabidopsis thaliana plant developmental proteins: Insights from Experimental and AlphaFold Approaches
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Actions for Mapping the structural coverage of Arabidopsis thaliana plant developmental proteins: Insights from Experimental and AlphaFold Approaches
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2w
2 weeks ago
Topology-aware reconstruction of cellular state landscapes from microscopy using self-supervised learning
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Actions for Topology-aware reconstruction of cellular state landscapes from microscopy using self-supervised learning
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2w
2 weeks ago
SciCore-Omics: a tri-modal foundation model unifying histology, spatial transcriptomics and language for spatial biology
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Actions for SciCore-Omics: a tri-modal foundation model unifying histology, spatial transcriptomics and language for spatial biology
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2w
2 weeks ago
CellClick: an interactive platform for adjustable and accurate cell type annotation in single-cell and spatial omics data
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Actions for CellClick: an interactive platform for adjustable and accurate cell type annotation in single-cell and spatial omics data
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2w
2 weeks ago
GalaxyVS: Exploring 100-Billion Compounds in Seconds
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Actions for GalaxyVS: Exploring 100-Billion Compounds in Seconds
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2w
2 weeks ago
Deep Proteoform Sequencing with Top-Down Direct Mass Technology
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Actions for Deep Proteoform Sequencing with Top-Down Direct Mass Technology
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2w
2 weeks ago
HyperNiche: Learning Heterophilic Cellular Niches with Hypergraph Neural Networks
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Actions for HyperNiche: Learning Heterophilic Cellular Niches with Hypergraph Neural Networks
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2w
2 weeks ago
ORIGAMI: Orientation-Aware Graph Neural Network for Assessing Multimeric Interfaces of Protein Complex Structures
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Actions for ORIGAMI: Orientation-Aware Graph Neural Network for Assessing Multimeric Interfaces of Protein Complex Structures
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2w
2 weeks ago
AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies
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Actions for AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies
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2w
2 weeks ago
sstar2: A Python Package for S*-based Archaic Introgression Detection with Machine Learning
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Actions for sstar2: A Python Package for S*-based Archaic Introgression Detection with Machine Learning
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