bioRxiv: Bioinformatics Preprints · Scour

AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies

sstar2: A Python Package for S*-based Archaic Introgression Detection with Machine Learning

CodeCytos: AI-assisted spatial molecular imaging analysis via code-augmented agent action space

Convergent Evolution in Tumor Genomes Targets Functional Domains

Improving the Accuracy of Forensic Age Estimation Through Bias Reduction

CpG Atlas: A centralized multi-layer database and AI interface for DNA methylation research

Reachability-Preserving Minimum Edge Cut Problem and Applications in Biology

ViTAMIn-O: Democratizing computer vision-based machine learning for stem cell research

Loss of tissue specificity and recurrent pan-cancer activation define a conserved oncogenic microRNA class

Information Geometry of Intracellular Compartment Coupling Reveals Transcriptomic State Transitions in Single Cells

ROTS 2.0: A reproducibility-driven framework for robust statistical modeling across diverse high-throughput omics study designs

Applying Spatial Statistics to Spatial Transcriptomics Reveals Local Association Between M2-like Macrophages and Fibrosis in Diabetic Kidney Disease

ATI_Box: A Simple tool for convolutional neural network-based image semantic segmentation

miDGD: a multi-modal deep generative model predicts miRNA expression from bulk or single-cell mRNA expression

Morphology-robust quantification of subcellular organization in complex cells

Decoding the Grammar of Protein-Protein Interaction Interfaces with Multimodal Representations

Quantifying and Predicting the Difficulty of Multiple Sequence Alignment with AlDiScore

Monju: Multi-criteria clustering in single-cell omics

Hierarchical refinements of cis-regulatory inputs improve scalable gene expression prediction

PepForge: Hierarchical HELM-Based Peptide Generation

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