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bioRxiv: Bioinformatics Preprints
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3w
3 weeks ago
GeneKnow: AI-powered literature synthesis for gene-context analysis
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Actions for GeneKnow: AI-powered literature synthesis for gene-context analysis
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3w
3 weeks ago
Reproducible and shareable bioinformatics pipelines from natural-language prompts
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Actions for Reproducible and shareable bioinformatics pipelines from natural-language prompts
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3w
3 weeks ago
Recursive exploration of metabolic yield space
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Actions for Recursive exploration of metabolic yield space
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3w
3 weeks ago
Ultra-efficient High Resolution 3D Reconstruction of Spatial Omics Data with Neural Transcriptomic Field
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Actions for Ultra-efficient High Resolution 3D Reconstruction of Spatial Omics Data with Neural Transcriptomic Field
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3w
3 weeks ago
Trustworthy ML/AI for Aging Clocks: Preventing Systematic Prediction Bias in Biological Age Estimation
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Actions for Trustworthy ML/AI for Aging Clocks: Preventing Systematic Prediction Bias in Biological Age Estimation
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3w
3 weeks ago
A Multi-Epitope Vaccine Design for Human Pasteurellosis using Outer Membrane β-barrel Proteins of Pasteurella multocida
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Actions for A Multi-Epitope Vaccine Design for Human Pasteurellosis using Outer Membrane β-barrel Proteins of Pasteurella multocida
biorxiv.org
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3w
3 weeks ago
Assessing and Optimizing Low-Frequency Somatic Mutation Detection: A Multi-Platform High-Throughput Sequencing Perspective
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Actions for Assessing and Optimizing Low-Frequency Somatic Mutation Detection: A Multi-Platform High-Throughput Sequencing Perspective
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3w
3 weeks ago
Rare RNA Polymerase II failure modes mark the cancer-driving genes most affected by epigenetic perturbation
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Actions for Rare RNA Polymerase II failure modes mark the cancer-driving genes most affected by epigenetic perturbation
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3w
3 weeks ago
Systematic In Silico Off-Target Assessment of siRNAs: Integrated Tissue-Specific Scoring and Cross-Species Preclinical Model Selection with TargetSureR
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Actions for Systematic In Silico Off-Target Assessment of siRNAs: Integrated Tissue-Specific Scoring and Cross-Species Preclinical Model Selection with TargetSureR
biorxiv.org
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3w
3 weeks ago
Predicting host-pathogen interactions using a proteome-scale language model
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Actions for Predicting host-pathogen interactions using a proteome-scale language model
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3w
3 weeks ago
fourSynergy: Ensemble-based interaction calling on 4C-seq data using gradient-free optimization
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Actions for fourSynergy: Ensemble-based interaction calling on 4C-seq data using gradient-free optimization
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3w
3 weeks ago
Decoding Hierarchical Cell-Cell Communication in Spatial Multi-Omics with CellSTIC
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Actions for Decoding Hierarchical Cell-Cell Communication in Spatial Multi-Omics with CellSTIC
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3w
3 weeks ago
TRACE: a graph-based workflow for TCR-epitope prioritization and tumor-reactive T-cell identification
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Actions for TRACE: a graph-based workflow for TCR-epitope prioritization and tumor-reactive T-cell identification
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3w
3 weeks ago
Analytical Choices Drive Toxicogenomic Potency Estimates: A Systematic Evaluation of Transcriptomic Points of Departure
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Actions for Analytical Choices Drive Toxicogenomic Potency Estimates: A Systematic Evaluation of Transcriptomic Points of Departure
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3w
3 weeks ago
A Foundation Model for the Cancer Genome
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Actions for A Foundation Model for the Cancer Genome
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3w
3 weeks ago
LRP2: A proteogenomics pipeline for long-read informed protein isoform analysis and discovery
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Actions for LRP2: A proteogenomics pipeline for long-read informed protein isoform analysis and discovery
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3w
3 weeks ago
Instance-Wise Contrastive Graph Neural Network Enables the Discovery of Novel Aedes aegypti Larvicidal Compounds
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Actions for Instance-Wise Contrastive Graph Neural Network Enables the Discovery of Novel Aedes aegypti Larvicidal Compounds
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3w
3 weeks ago
Genotype and methylation interact to reconfigure transcriptional regulation in colorectal cancer
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Actions for Genotype and methylation interact to reconfigure transcriptional regulation in colorectal cancer
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3w
3 weeks ago
reComBat-seq: Regularized negative binomial regression for batch-effect correction in underdetermined transcriptomics datasets
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Actions for reComBat-seq: Regularized negative binomial regression for batch-effect correction in underdetermined transcriptomics datasets
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3w
3 weeks ago
BasalCell: A project scaffold generator for bioinformatics analysis
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Actions for BasalCell: A project scaffold generator for bioinformatics analysis
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