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bioRxiv: Bioinformatics Preprints
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2w
2 weeks ago
Bridging Ancestry Gaps in Genomic Risk Prediction with Tabular Foundation Models
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Actions for Bridging Ancestry Gaps in Genomic Risk Prediction with Tabular Foundation Models
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2w
2 weeks ago
Nucleic acid 3D structure search and alignment with GTalign
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Actions for Nucleic acid 3D structure search and alignment with GTalign
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2w
2 weeks ago
An integrated resource for systems-level analysis of aging hallmarks and associated genes
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Actions for An integrated resource for systems-level analysis of aging hallmarks and associated genes
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2w
2 weeks ago
Mechanistic Interpretability for Protein Language Models: A Validation Framework
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Actions for Mechanistic Interpretability for Protein Language Models: A Validation Framework
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2w
2 weeks ago
UMITIC: An unsupervised framework for the joint characterization of cellular phenotypes and spatial neighborhoods in multiplex and hyperplex immunofluorescence ...
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Actions for UMITIC: An unsupervised framework for the joint characterization of cellular phenotypes and spatial neighborhoods in multiplex and hyperplex immunofluorescence ...
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2w
2 weeks ago
RAD: A Read-structure Agnostic Demultiplexer for Single-Cell Long-Read Sequencing and Analysis
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Actions for RAD: A Read-structure Agnostic Demultiplexer for Single-Cell Long-Read Sequencing and Analysis
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2w
2 weeks ago
Deciphering functional dark matter: Machine and deep learning-based processing of protein embeddings enables targeted function discoveries
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Actions for Deciphering functional dark matter: Machine and deep learning-based processing of protein embeddings enables targeted function discoveries
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2w
2 weeks ago
Species- and Topic-aware Representation Learning for Antimicrobial Peptide Discovery
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Actions for Species- and Topic-aware Representation Learning for Antimicrobial Peptide Discovery
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2w
2 weeks ago
SNV and indel error modeling of deep targeted cell-free DNA sequencing data for sensitive detection of circulating tumor DNA in colorectal cancer
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Actions for SNV and indel error modeling of deep targeted cell-free DNA sequencing data for sensitive detection of circulating tumor DNA in colorectal cancer
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2w
2 weeks ago
Ground Truth-Based Evaluation of False Discovery Rate and Statistical Power in DIA Proteomics
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Actions for Ground Truth-Based Evaluation of False Discovery Rate and Statistical Power in DIA Proteomics
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2w
2 weeks ago
Combining transcriptomic resolutions and machine learning strategies uncovers new OXPHOS genes in Caenorhabditis elegans
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Actions for Combining transcriptomic resolutions and machine learning strategies uncovers new OXPHOS genes in Caenorhabditis elegans
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2w
2 weeks ago
A Pan-Cancer Multi-Omic SuperLearner for Regulated Cell Death Survival Topologies
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Actions for A Pan-Cancer Multi-Omic SuperLearner for Regulated Cell Death Survival Topologies
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2w
2 weeks ago
Equitable Health Intelligence: An Open Benchmark of Multi-Population Machine Learning for Omics-Based Cancer Prognosis
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Actions for Equitable Health Intelligence: An Open Benchmark of Multi-Population Machine Learning for Omics-Based Cancer Prognosis
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3w
3 weeks ago
GeneKnow: AI-powered literature synthesis for gene-context analysis
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Actions for GeneKnow: AI-powered literature synthesis for gene-context analysis
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3w
3 weeks ago
Reproducible and shareable bioinformatics pipelines from natural-language prompts
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Actions for Reproducible and shareable bioinformatics pipelines from natural-language prompts
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3w
3 weeks ago
Recursive exploration of metabolic yield space
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Actions for Recursive exploration of metabolic yield space
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3w
3 weeks ago
Ultra-efficient High Resolution 3D Reconstruction of Spatial Omics Data with Neural Transcriptomic Field
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Actions for Ultra-efficient High Resolution 3D Reconstruction of Spatial Omics Data with Neural Transcriptomic Field
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3w
3 weeks ago
Trustworthy ML/AI for Aging Clocks: Preventing Systematic Prediction Bias in Biological Age Estimation
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Actions for Trustworthy ML/AI for Aging Clocks: Preventing Systematic Prediction Bias in Biological Age Estimation
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3w
3 weeks ago
A Multi-Epitope Vaccine Design for Human Pasteurellosis using Outer Membrane β-barrel Proteins of Pasteurella multocida
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Actions for A Multi-Epitope Vaccine Design for Human Pasteurellosis using Outer Membrane β-barrel Proteins of Pasteurella multocida
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3w
3 weeks ago
Assessing and Optimizing Low-Frequency Somatic Mutation Detection: A Multi-Platform High-Throughput Sequencing Perspective
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Actions for Assessing and Optimizing Low-Frequency Somatic Mutation Detection: A Multi-Platform High-Throughput Sequencing Perspective
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