bioRxiv: Bioinformatics Preprints · Scour

HESTA: a curated and reusable database for the human early organogenesis spatiotemporal transcriptome atlas

Just Add Structure: Protein Language Models Combined with Structural Equivariance Excel at Protein Tasks

Complex Indel Detection: A Simulation-Based Framework and Parsing with FreeBayes

Multiple versus pairwise sequence alignments for protein phylogenetics using foundation models

Memory-safe high-performance sequence mapping with rammap

SPACKLE: A spatial-first framework for multi-layer spatial transcriptomic analysis

Transcriptomics-Conditioned Virtual Tissue Synthesis via Diffusion Transformers

Computational Structure Modeling, Functional Characterization, and Identification of Potential Inhibitors for the cyclic-di-GMP Mediated Biofilm Forming Membran...

DINMC: A Deep Learning Framework for Interpretable Normative Model Construction and Pathological Brain Alteration Detection

ModCRE-NN: Interpretable Deep Learning Harnesses Structural and Evolutionary Synergy to Predict Transcription Factor Binding Specificity

Improving viral protein clustering using both diversified protein profiles and structural information

Leveraging AI and structural proteomics for rational design of a KAT6A degrader

Mapping Genetic Risk Associations to Cellular Contexts via Deep Learning and Biological Ontologies

BIFO: A Biological Information Flow Ontology for Directed Propagation in Heterogeneous Biomedical Knowledge Graphs

MINA: linear probes reveal coding-sequence family signal in frozen DNA encoders

Individual-Specific Gaussian Graphical Models for Heterogeneous Populations with Application to Epigenetic Gene Regulation in Lung Adenocarcinoma

A New Hybrid Method for Brain Tumor Detection Based on Deep Learning

SwiftNJ: Fast Exact Neighbour Joining via Correctness-Gated Coding Agents

Evaluating Long-Range Temporal Structure in Foundation Model-Based Forecasts of Heartbeat Dynamics

CARIBOU: Computational AI Research Interface for Bioinformatics, Omics, and Unifying Agents

Log in to enable infinite scrolling