bioRxiv: Bioinformatics Preprints

Human Proteome-wide Mechanistic Interpretation of Missense Variants through Protein Feature Enrichment Score

biorxiv.org·

TIMS-Bench: Towards community standards for benchmarking untargeted trapped ion mobility metabolomics tools and datasets

biorxiv.org·

gTranslate: rapid and accurate translation table prediction for prokaryotic genomes

biorxiv.org·

Annotation-free sequence-level multimodal graph learning reveals gut microbiome signatures of atherosclerotic cardiovascular disease

biorxiv.org·

A scutum-focused deep learning pipeline for species-level identification of Aedes aegypti and Aedes albopictus from citizen-science images

biorxiv.org·

Training Strategy Optimization to Mitigate Shortcut Learning in Pan-Cancer Drug Response Prediction

biorxiv.org·

GraphTox: A Semi-Supervised Pre-Trained Framework for Peptide Toxicity Prediction using Geometric Graph Transformer and LORA-Based Finetuning

biorxiv.org·

STID: A Standardized Spatial Transcriptomic Analysis Framework for Infectious Diseases

biorxiv.org·

Slivka and Slivka-bio: a lightweight framework for presenting executables as web services and its application in bioinformatics.

biorxiv.org·

Inferring Multi-Stage Pathway Progression Models from Tumor Phylogenies

biorxiv.org·

Accelerated Aging Signatures in 3D Genome Organization and Transcriptome in Schizophrenia

biorxiv.org·

Fast Set Operations for Compact k-mer Sets

biorxiv.org·

Design of a Multi-epitope Vaccine Against Human Glanders Targeting Outer Membrane β-barrel Proteins of Burkholderia mallei

biorxiv.org·

Transcriptomic Profiling and Regulatory Network Analysis of Ten Metabolic Transporters Across Five Diabetic Complications: A Multi-Dataset, Twelve-Phase GEO Bio...

biorxiv.org·

Sequence-Based Prioritization of Promoter Regulatory Variants in Colorectal Cancer Using a DNA Foundation Model

biorxiv.org·

growthcurves: User-friendly tools for quality-controlled cellular growth analysis

biorxiv.org·

CARIBOU: Computational AI Research Interface for Bioinformatics, Omics, and Unifying Agents

ProtXAI: Explainable AI Reveals Structural Determinants of Protein Dynamics

TopOmics: Topic Modelling for All Omics

Human Proteome-wide Mechanistic Interpretation of Missense Variants through Protein Feature Enrichment Score

TIMS-Bench: Towards community standards for benchmarking untargeted trapped ion mobility metabolomics tools and datasets

gTranslate: rapid and accurate translation table prediction for prokaryotic genomes

Annotation-free sequence-level multimodal graph learning reveals gut microbiome signatures of atherosclerotic cardiovascular disease

A scutum-focused deep learning pipeline for species-level identification of Aedes aegypti and Aedes albopictus from citizen-science images

Training Strategy Optimization to Mitigate Shortcut Learning in Pan-Cancer Drug Response Prediction

GraphTox: A Semi-Supervised Pre-Trained Framework for Peptide Toxicity Prediction using Geometric Graph Transformer and LORA-Based Finetuning

STID: A Standardized Spatial Transcriptomic Analysis Framework for Infectious Diseases

Slivka and Slivka-bio: a lightweight framework for presenting executables as web services and its application in bioinformatics.

Inferring Multi-Stage Pathway Progression Models from Tumor Phylogenies

Accelerated Aging Signatures in 3D Genome Organization and Transcriptome in Schizophrenia

Fast Set Operations for Compact k-mer Sets

Design of a Multi-epitope Vaccine Against Human Glanders Targeting Outer Membrane β-barrel Proteins of Burkholderia mallei

Transcriptomic Profiling and Regulatory Network Analysis of Ten Metabolic Transporters Across Five Diabetic Complications: A Multi-Dataset, Twelve-Phase GEO Bio...

Sequence-Based Prioritization of Promoter Regulatory Variants in Colorectal Cancer Using a DNA Foundation Model

growthcurves: User-friendly tools for quality-controlled cellular growth analysis

Toward Large-Scale Numerical Modeling of the Cardiovascular System with up to 34 Billion Vessels