bioRxiv: Bioinformatics Preprints · Scour

Molecular Characterization of T-Lineage Acute Lymphoblastic Leukemia by an Optimal-Transport Based Multi-Omics Integration Framework

Prediction and evaluation of Split-ORFs using Ribo-seq data

GenesetDiseaseDrugNetwork (GDDN): a web server for disease enrichment and drug prioritization

Benchmarking sequence performance on the DNBSEQ-T7 using Genome in a Bottle reference genomes

Pathogen-specific antimicrobial activity prediction with biological large language model-based methods

Cycle-consistent deep generative modeling unifies cellular states across unpaired spatial and single-cell modalities

Synthetic RNA-seq cohorts for data sharing: a discovery-aware benchmark at transcriptome scale

Decoding Multicellular Communication Motifs from Spatial Transcriptomics with ALARMIST

Precision survival estimation in acute myeloid leukemia using evolutionary learning-derived microRNA signature

Application of Computer Vision Tools to Maize Genomic Data for Trait Prediction and Gene Discovery

GAE-Δ: A Graph-Learning Framework for Gene Network Rewiring and Clinical Outcome Prediction from Multi-Omics Data

Multi-Algorithm Machine Learning Benchmarking for Pan-Cancer Classification from Tumour-Educated Platelet RNA Sequencing

Benchmark Bias and Conformational Dynamics in Allosteric Site Prediction

CoSTAR: Coarse Stem-Topology Alignment of Pseudoknotted RNA Structures by Relation-Constrained Search

LVentiView: An Open-Source Software for Automated 3D Left Ventricular Mesh Reconstruction and Analysis from Cardiac MRI

Tandem: a bioinformatics tool for detection, mechanism classification, and population quantification of bacterial tandem gene duplications

SCALLOPS: a scalable, integrated computational framework for Optical Pooled Screens

Constrained protein Large Language Model illustrated in protein stability, function and epistasis

NAP: an open-source pipeline for cross-domain microbiome profiling using Nanopore sequencing-derived amplicon data

Vision-Based Genomic Model for Copy Number Variant Pathogenicity Prediction

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