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bioRxiv: Bioinformatics Preprints
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3w
3 weeks ago
Sequence-independent protein domain detection and classification with PRISM
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Actions for Sequence-independent protein domain detection and classification with PRISM
biorxiv.org
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3w
3 weeks ago
NeuroFate: endpoint-locked transcriptomic axis scoring for neurodegeneration risk research
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Actions for NeuroFate: endpoint-locked transcriptomic axis scoring for neurodegeneration risk research
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3w
3 weeks ago
There and back again: a multi-omics tale of thyroid co-expression network rewiring
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Actions for There and back again: a multi-omics tale of thyroid co-expression network rewiring
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3w
3 weeks ago
Distinct fibrotic, epithelial and immune transcriptomic programs in phenotypes of chronic lung allograft dysfunction
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Actions for Distinct fibrotic, epithelial and immune transcriptomic programs in phenotypes of chronic lung allograft dysfunction
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3w
3 weeks ago
ATLAS: a scverse-compatible package for multi-omic single-cell trajectory inference integration
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Actions for ATLAS: a scverse-compatible package for multi-omic single-cell trajectory inference integration
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3w
3 weeks ago
ClusToRa: A niche-centric framework for identifying structural recruitment and infiltration in spatial omics
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Actions for ClusToRa: A niche-centric framework for identifying structural recruitment and infiltration in spatial omics
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3w
3 weeks ago
SQANTI-browser: visualization and curation of SQANTI3-classified long-read transcriptomes within the UCSC Genome Browser
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Actions for SQANTI-browser: visualization and curation of SQANTI3-classified long-read transcriptomes within the UCSC Genome Browser
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3w
3 weeks ago
UcTCRp: a TCRβ-based framework for quantitative MAIT- and iNKT-associated repertoire-state profiling
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Actions for UcTCRp: a TCRβ-based framework for quantitative MAIT- and iNKT-associated repertoire-state profiling
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3w
3 weeks ago
Ordered Gromov-Hausdorff Metric: A New Tool for Comparative Analysis of Protein Structures
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Actions for Ordered Gromov-Hausdorff Metric: A New Tool for Comparative Analysis of Protein Structures
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3w
3 weeks ago
Minimal Computational Framework for Systematic Identification of Antimicrobial Targets
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Actions for Minimal Computational Framework for Systematic Identification of Antimicrobial Targets
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3w
3 weeks ago
In silico characterization of unique fungal modular rhodopsin expands the horizon of novel optobiological and biomedical applications
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Actions for In silico characterization of unique fungal modular rhodopsin expands the horizon of novel optobiological and biomedical applications
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4w
4 weeks ago
ARGus: A Co-assembly workflow for MAG generation, ARG detection, and virulence analysis
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Actions for ARGus: A Co-assembly workflow for MAG generation, ARG detection, and virulence analysis
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4w
4 weeks ago
CryoARC: Atomic-resolution conformational landscapes of protein assemblies from cryo-EM single particles with evolutionary priors
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Actions for CryoARC: Atomic-resolution conformational landscapes of protein assemblies from cryo-EM single particles with evolutionary priors
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4w
4 weeks ago
How flat is your sample? An opportunistic survey of 3D tilt in public fluorescence microscopy data
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Actions for How flat is your sample? An opportunistic survey of 3D tilt in public fluorescence microscopy data
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4w
4 weeks ago
SynFit: Synergistic Contrastive Learning for Multi-Objective Protein Fitness Prediction and Optimization
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Actions for SynFit: Synergistic Contrastive Learning for Multi-Objective Protein Fitness Prediction and Optimization
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4w
4 weeks ago
Gene-Specific Analysis of Clonal Hematopoiesis Identifies ASXL1 as a Risk Factor for Lung Cancer
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Actions for Gene-Specific Analysis of Clonal Hematopoiesis Identifies ASXL1 as a Risk Factor for Lung Cancer
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4w
4 weeks ago
Sparse, trainable subnetworks for multi-omics integration: a cross-validated evaluation of the Lottery Ticket Hypothesis across nutrigenomic, toxicogenomic, and...
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Actions for Sparse, trainable subnetworks for multi-omics integration: a cross-validated evaluation of the Lottery Ticket Hypothesis across nutrigenomic, toxicogenomic, and...
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4w
4 weeks ago
StrucNS reveals interaction-weighted network topology as the driving predictor of absolute stability of natural and de novo proteins
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Actions for StrucNS reveals interaction-weighted network topology as the driving predictor of absolute stability of natural and de novo proteins
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4w
4 weeks ago
Beyond natural amino acids: Extending immunogenicity risk assessment to non-canonical peptide drugs through chemical feature encoding
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Actions for Beyond natural amino acids: Extending immunogenicity risk assessment to non-canonical peptide drugs through chemical feature encoding
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4w
4 weeks ago
ARACoFusion: Uncertainty-aware calibrated deep learning for protein-protein interaction network prediction in Arabidopsis thaliana
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Actions for ARACoFusion: Uncertainty-aware calibrated deep learning for protein-protein interaction network prediction in Arabidopsis thaliana
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