bioRxiv: Bioinformatics Preprints · Scour

GatorDuo: Global-Consistency Dual-Graph Refinement With Pseudo-Label Agreement for Spatial Transcriptomics

Disease-guided functional gene mapping across species reveals translational correspondences beyond sequence orthology

A Comprehensive Benchmarking of Spatial Deconvolution andDomain Detection Methods across Diverse Tissues and SpatialTranscriptomic Technologies

An improved generic schema for high fidelity data linkage and sample tracing across complex multi-assay medical entomology studies

Phylogenomic coupling of F1 chemosensory and archaellum systems across archaea and monoderm bacteria

ProCAST: A Bioinformatics Suite for Mass Spectrometry-Based Protein Corona Proteomics Analysis

CausalKnowledgeTrace: A Novel Computational Framework for Automated Literature-Based Causal Graph Construction and Evidence-Based Variable Selection in Biomedic...

MicrobeMS - A MATLAB Toolbox for Microbial Identification Based on Mass Spectrometry

SigBridgeR: An Integrative Framework and Toolkit for Comprehensive Screening and Benchmarking of Phenotype-Associated Cell Subpopulations in Single-Cell Transcr...

Dogcatcher2: Improved statistical detection of transcriptional readthrough and repetitive element analysis across sequencing platforms

MuseDrift: Navigating Protein Evolutionary Manifolds with Conditional Discrete Diffusion

A Conditional Random Field approach for de novo reconstruction of bacterial haplotypes from a de Bruijn graph representation

PARiS: Probabilistic Assignment and Repartitioning of isomiR Sequences: A data-driven method for denoising isomiR read count data

Temporal-deviation-driven community detection uncovers early-warning signals for critical transitions in complex diseases

Early plasma proteomic alterations precede amyloidosis diagnosis, reflecting cardiac and immune dysregulation

Unlocking Open-Access Genomic and Transcriptomic Data: The First Bioinformatic Exploitation of Tunisian Durum Wheat Landraces Chili and Mahmoudi, Pioneering Dat...

WasteFams: A database of protein families from global wastewater microbiomes

AI-derived Protein Structures Validation: AlphaFold2 Models in the Twilight Zone

Figra: A WebAssembly-based Excel Add-in for publication-quality scientific visualization with ggplot2

BAT: an integrated pipeline for gene tree construction, annotation, and functional inference

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