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bioRxiv: Bioinformatics Preprints
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8w
8 weeks ago
Aiki-GeNano: Multi-Stage Preference Optimization for Generative Design of Developable Nanobodies
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Actions for Aiki-GeNano: Multi-Stage Preference Optimization for Generative Design of Developable Nanobodies
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8w
8 weeks ago
Reconstructing True 3D Spatial Omics at Single-Cell Resolution
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Actions for Reconstructing True 3D Spatial Omics at Single-Cell Resolution
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8w
8 weeks ago
Skill-Augmented Frontier Agents Nearly Saturate BixBench-Verified-50
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Actions for Skill-Augmented Frontier Agents Nearly Saturate BixBench-Verified-50
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8w
8 weeks ago
Differential peripheral immune dynamics underlie therapeutic response to chemotherapy and chemo-immunotherapy in triple-negative breast cancer
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Actions for Differential peripheral immune dynamics underlie therapeutic response to chemotherapy and chemo-immunotherapy in triple-negative breast cancer
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8w
8 weeks ago
Molecular Translators as a Computational Primitive for Biomarker Discovery: Learnability Gains Under Conserved Information Ceilings
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Actions for Molecular Translators as a Computational Primitive for Biomarker Discovery: Learnability Gains Under Conserved Information Ceilings
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8w
8 weeks ago
Advances in protein function prediction from the fifth CAFA challenge
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Actions for Advances in protein function prediction from the fifth CAFA challenge
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8w
8 weeks ago
TxConformal: Controlling False Discoveries in AI-Driven Therapeutic Discovery
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Actions for TxConformal: Controlling False Discoveries in AI-Driven Therapeutic Discovery
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8w
8 weeks ago
CHAMPOLLION: Robust Multi-Omics Integration via Inverse Optimal Transport Using Paired Cells
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Actions for CHAMPOLLION: Robust Multi-Omics Integration via Inverse Optimal Transport Using Paired Cells
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8w
8 weeks ago
Isolation and Genomic Characterization of Myxococcus faecalis Strains from Mangroves in Southeastern Brazil
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Actions for Isolation and Genomic Characterization of Myxococcus faecalis Strains from Mangroves in Southeastern Brazil
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8w
8 weeks ago
SubCellSpace: Automated characterization of subcellular mRNA localization patterns in spatial transcriptomics
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Actions for SubCellSpace: Automated characterization of subcellular mRNA localization patterns in spatial transcriptomics
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8w
8 weeks ago
DCAFA: Differential Community Abundance and Feature Analysis for Histological Images
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Actions for DCAFA: Differential Community Abundance and Feature Analysis for Histological Images
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8w
8 weeks ago
SPPIDER-seq: Sequence-based partner-aware predictor of protein-protein interaction sites
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Actions for SPPIDER-seq: Sequence-based partner-aware predictor of protein-protein interaction sites
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8w
8 weeks ago
Unlocking Multi-Sample Differential Expression for Spatial Transcriptomics Data with TESSERA
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Actions for Unlocking Multi-Sample Differential Expression for Spatial Transcriptomics Data with TESSERA
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8w
8 weeks ago
rhapsodist: a reproducible Snakemake workflow for BD~Rhapsody single-cell RNA-seq data
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Actions for rhapsodist: a reproducible Snakemake workflow for BD~Rhapsody single-cell RNA-seq data
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8w
8 weeks ago
Species-specific transformer models of bacterial gene order and content for genomic surveillance tasks
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Actions for Species-specific transformer models of bacterial gene order and content for genomic surveillance tasks
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8w
8 weeks ago
Dynamical instability measured by temporal entropy improves psychiatric classification across cohorts
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Actions for Dynamical instability measured by temporal entropy improves psychiatric classification across cohorts
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8w
8 weeks ago
A Conditional Variational Autoencoder with QSAR-Guided Surrogate-Weighted Fine-Tuning and Cross-Entropy Optimization for Targeted Antimicrobial Peptide Generati...
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Actions for A Conditional Variational Autoencoder with QSAR-Guided Surrogate-Weighted Fine-Tuning and Cross-Entropy Optimization for Targeted Antimicrobial Peptide Generati...
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8w
8 weeks ago
ICON: An isoform-aware hierarchical random forest model for cell type classification
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Actions for ICON: An isoform-aware hierarchical random forest model for cell type classification
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8w
8 weeks ago
CountESS: a flexible, graphical pipeline tool for deep mutational scanning analysis
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Actions for CountESS: a flexible, graphical pipeline tool for deep mutational scanning analysis
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8w
8 weeks ago
Systems Pharmacology Reveals Type I Interferon and Myeloid-Like B Cell Reprogramming as Druggable Axes in Antiphospholipid Syndrome
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Actions for Systems Pharmacology Reveals Type I Interferon and Myeloid-Like B Cell Reprogramming as Druggable Axes in Antiphospholipid Syndrome
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