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bioRxiv: Bioinformatics Preprints
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8w
8 weeks ago
Single-cell foundation models reveal context-sensitive cancer programmes under subtype shift
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Actions for Single-cell foundation models reveal context-sensitive cancer programmes under subtype shift
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8w
8 weeks ago
Rapid-PFP: Accelerating Prefix-Free Parsing with GPU Parallelism
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Actions for Rapid-PFP: Accelerating Prefix-Free Parsing with GPU Parallelism
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8w
8 weeks ago
JUMPlion improves quantitative DIA proteomics through ion-level recovery of missing values
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Actions for JUMPlion improves quantitative DIA proteomics through ion-level recovery of missing values
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8w
8 weeks ago
ZonationR: An R interface to the Zonation software for reproducible spatial conservation prioritisation workflows
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Actions for ZonationR: An R interface to the Zonation software for reproducible spatial conservation prioritisation workflows
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8w
8 weeks ago
Confronting global eradication of TB head on: Uncovering the root of drug resistance and bacterial survival strategies through a comprehensive computational stu...
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Actions for Confronting global eradication of TB head on: Uncovering the root of drug resistance and bacterial survival strategies through a comprehensive computational stu...
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8w
8 weeks ago
MorphOTU: A universal image-based framework for delineating biodiversity discovery
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Actions for MorphOTU: A universal image-based framework for delineating biodiversity discovery
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8w
8 weeks ago
linearPOA: A parallel, memory-efficient framework for Partial Order Alignment with linear space complexity
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Actions for linearPOA: A parallel, memory-efficient framework for Partial Order Alignment with linear space complexity
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8w
8 weeks ago
Data-driven prioritization of mouse strains for improved preclinical modeling of rare and common disease
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Actions for Data-driven prioritization of mouse strains for improved preclinical modeling of rare and common disease
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8w
8 weeks ago
GRNPred: A Multimodal Graph Transformer with Masked Gene Expression Pretraining for Gene Regulatory Network Inference
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Actions for GRNPred: A Multimodal Graph Transformer with Masked Gene Expression Pretraining for Gene Regulatory Network Inference
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8w
8 weeks ago
An Open-Source Reproducible Workflow for Pocket-Oriented Virtual Screening and ADME-Integrated Chemoinformatics: A Multi-Target Flavivirus Case Study
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Actions for An Open-Source Reproducible Workflow for Pocket-Oriented Virtual Screening and ADME-Integrated Chemoinformatics: A Multi-Target Flavivirus Case Study
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8w
8 weeks ago
Explainable Prototype Booster: Enhancing Latent Representations of Foundation Models for Gene Expression Prediction
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Actions for Explainable Prototype Booster: Enhancing Latent Representations of Foundation Models for Gene Expression Prediction
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8w
8 weeks ago
Diagnosing protein sequence search in the era of language models
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Actions for Diagnosing protein sequence search in the era of language models
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8w
8 weeks ago
Structure-Guided Biochemical Design of DNA Tweezers As A Dual Target of the Primary Glioblastoma Biomarkers S100A4 and Midkine
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Actions for Structure-Guided Biochemical Design of DNA Tweezers As A Dual Target of the Primary Glioblastoma Biomarkers S100A4 and Midkine
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8w
8 weeks ago
SMEW: An interactive multi-scale toolkit for cross-condition and network-based analysis of spatial metabolomics data
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Actions for SMEW: An interactive multi-scale toolkit for cross-condition and network-based analysis of spatial metabolomics data
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8w
8 weeks ago
A Bayesian approach for identifying similar transcript dynamics using curve registration
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Actions for A Bayesian approach for identifying similar transcript dynamics using curve registration
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8 weeks ago
Scaling and democratising structure-based protein function prediction with metagenomic-deepFRI
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Actions for Scaling and democratising structure-based protein function prediction with metagenomic-deepFRI
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8w
8 weeks ago
MetaMAG Explorer: A Database-Augmenting Pipeline for Genome-Resolved Metagenomics and Enhanced Microbial Classification
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Actions for MetaMAG Explorer: A Database-Augmenting Pipeline for Genome-Resolved Metagenomics and Enhanced Microbial Classification
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8w
8 weeks ago
Whole-Proteome ESM-2 Embeddings Recover Taxonomy and Enable Geometry-Aware Triage of Foodborne Bacterial Genomes
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Actions for Whole-Proteome ESM-2 Embeddings Recover Taxonomy and Enable Geometry-Aware Triage of Foodborne Bacterial Genomes
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8w
8 weeks ago
AssayBLAST v2: Major update improving reliability and reporting of the in silico analysis of molecular multi-parameter assays
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Actions for AssayBLAST v2: Major update improving reliability and reporting of the in silico analysis of molecular multi-parameter assays
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8w
8 weeks ago
Physics-inspired computational methods for spatial transcriptomics reveal a dysplasia-restricted premalignant basin and a density-asymmetric autocrine niche in ...
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Actions for Physics-inspired computational methods for spatial transcriptomics reveal a dysplasia-restricted premalignant basin and a density-asymmetric autocrine niche in ...
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