bioRxiv: Bioinformatics Preprints · Scour

EnzCast: Prediction of Patient-Specific Enzymatic Kinetics through Multi-Modal Deep Learning and Isoform-Resolved Bayesian Inference based on Single-Cell Transc...

Understanding the bias of compositional microbiome differential abundance estimation

Metacontam: A Negative Control-Free Decontamination Method for Metagenomic Analysis

Advancing ab initio genome annotation with OrionGeno

PixelDeck: A local-first media library manager for biomedical imaging

Expanding the options for therapeutic exon skipping as a future treatment for USH2A-associated disease by 3D structural modeling of newly formed hybrid domains

Improving Biological Sequence Prediction with AlphaFold2 Representation

Protein Function Prediction with Pretrained ProtT5 Embeddings and Gradient Boosting

Accurate ab initio gene prediction in eukaryotes with Tiberius in multiple clades

A Multi-modal LLM-Knowledge Fusion Framework for Predicting Single-cell Genetic Perturbation Effects

Learning dynamics of unsupervised deep learning reveal epoch-specific genetic architectures of brain morphology

ActSeekN: A Structural-Motif-Based Pipeline for Interpretable Enzyme Function Annotation

Topological attention asymmetry in ESM-2 attention implicitly encodes the allosteric hierarchy of the adenosine A2A receptor

A transcriptomic-driven segmentation and cell simulation framework for high-resolution spatial transcriptomics and cell-cell communication

Pan-cancer virtual spatial transcriptomics from routine histology with Phoenix

GenPept-Curated-2025: A Benchmark Dataset for Antimicrobial Peptide Prediction with Homology-Controlled Partitioning

Scalable machine learning improves resistance prediction and identifies novel determinants in Mycobacterium tuberculosis

Deterministic retrieval recovers biomedical associations lost by language models

Topology-driven classification of time series

Integrating the MARTINI2 Coarse-Grained Force Field into HADDOCK3 for Faster Modelling of Large Biomolecular Complexes

Log in to enable infinite scrolling