🔬 Single-cell RNA-Seq - pfh · Scour

Inferring stochastic dynamics by biophysical Neural ODE using single-cell transcriptomics 🦠Whole cell model

Learning multi-cellular representations of single-cell transcriptomics data enables characterization of patient-level disease states 🗺️UMAP

Gene regulatory networks define human airway epithelial cell types and their distinct responses to type I interferon 📊Differential Expression

biorxiv.org·6d

The mechanical microenvironment and lung stem cell fate 🦠Whole cell model

frontiersin.org·17h

scHelix: Asymmetric Dual-Stream Integration via Explicit Gene-Level Disentanglement 📦Pseudobulk

Scientists Engineered An Electrical Link That Can Tune Brain Circuits, Change Behavior 🗺️Network Visualization

studyfinds.com·6d

A new imaging approach captures brain activity across nine cell types at once 🗺️Spatial Transcriptomics

medicalxpress.com·1d

Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change 📊Differential Expression

An integrative omics-guided druggability analysis of VCX2 in hepatocellular carcinoma using Peruvian natural products 🔥ComplexHeatmap

frontiersin.org·1d

BRIDGE-GRN: Role-Aware Bi-Tower Graph Learning with Cross-View Contrast for Directed Gene Regulatory Network Inference 🗺️Network Visualization

biorxiv.org·5d

Identifying maximally informative signal-aware representations of single-cell data using the information bottleneck 📦Pseudobulk

Algal Betaine Triggers Bacterial Hydrogen Peroxide Production that Promotes Algal Demise 🧬Bioconductor

Global cell-state and gene-program representations reveal conserved and context-specific perturbation responses of cells 🗺️UMAP

biorxiv.org·1d

The Onset of Myeloid Differentiation in Hematopoietic Progenitors In Vivo is Coordinated with S-phase Progression 📊Differential Expression

biorxiv.org·6d

IntegrateRigor: annotation-free integration optimization for cell identity recovery reveals cancer-immune interface niches 🗺️UMAP

biorxiv.org·2d

The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlas 📄FASTQ

biorxiv.org·1d

Spinal lumen remodeling under the control of Gli signaling mechanically drives roof plate cells extension 🗺️Spatial Transcriptomics

biorxiv.org·5d

Cross-Cohort Optimal Transport Maps Macrophage Plasticity and Competing Routes to Inflammation and Fibrosis in Human Atherosclerotic Plaques 🔥ComplexHeatmap

biorxiv.org·1d

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