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iwatobipen.wordpress.com
Integration QM and
RDKit
#
cheminformatics
#orca
iwatobipen.wordpress.com
·
1w
Tool for automated
protein-ligand
binding site extraction #
cheminformatics
#Journal #memo
iwatobipen.wordpress.com
·
2w
ESI descriptors for scaffold hopping #memo #journal #
LBDD
#
cheminformatics
iwatobipen.wordpress.com
·
5w
Use
transformer
model for Lead optimization #journal #
memo
iwatobipen.wordpress.com
·
6w
Change heterocycle to another
isoster
with
HCIE
#memo #cheminformatics #RDKit
iwatobipen.wordpress.com
·
10w
Rendering molecular image on Dataframe and Plot with marimo #Memo #
RDKit
#
Cheminformatics
iwatobipen.wordpress.com
·
10w
Split PROTAC molecule to 3
compornents
with protac_splitter #RDKit #
cheminfomratics
#memo #python
iwatobipen.wordpress.com
·
14w
New clustering algorithm for
cheminformatics
#
bblean
#
cheminformatics
#RDKit
iwatobipen.wordpress.com
·
16w
Useful utils for analysing chemical reaction #
cheminformatics
#rdkit #
rxnutils
iwatobipen.wordpress.com
·
18w
Look Back at 2025 #
diary
iwatobipen.wordpress.com
·
19w
Considering predictive models for using
cheminfomratics
tasks #
cheminfomratics
#
memo
#journal
iwatobipen.wordpress.com
·
19w
Use
joblib
with
free-threaded
python #memo #diary
iwatobipen.wordpress.com
·
22w
Similarity screening with RDKit #RDKit #
SimilarityScreener
#memo #
cheminformatics
iwatobipen.wordpress.com
·
25w
Install
roshambo2
to pixi env #memo #
cheminformatics
#RDKit
iwatobipen.wordpress.com
·
27w
Run MD simulation with
Openff
&
Openmm
on pixi’s env #cheminformatics #RDKit #pixi #memo
iwatobipen.wordpress.com
·
28w
Build environment from github repository with
pixi
#
cheminformatics
#memo #
pixi
iwatobipen.wordpress.com
·
28w
Try to use new package manager for python #
pixi
#
memo
iwatobipen.wordpress.com
·
31w
GPU based fast Shape alignment of molecules #RDKit #
Roshambo2
#
Cheminformatics
iwatobipen.wordpress.com
·
33w
RDKit meets GPU #RDKit #
nvmolkit
#nvidia #
cheminformatics
iwatobipen.wordpress.com
·
35w
Contribute
open science #memo #
dirary
iwatobipen.wordpress.com
·
38w
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